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Crystal structure of the fucose mutarotase in complex with L-fucose from Streptococcus pneumoniae
Crystallization Crystal Properties Matthews coefficient Solvent content 2.29 46.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.319 α = 90 b = 144.158 β = 97.51 c = 165.46 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 RIGAKU AREA DETECTOR OSMIC 'BLUE' M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99.7 0.09 4 97486 2 38.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.5 19.97 97486 5139 99.61 0.22822 0.22482 0.2198 0.29174 0.2853 RANDOM 38.226
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.62 r_dihedral_angle_4_deg 19.451 r_dihedral_angle_3_deg 17.68 r_dihedral_angle_1_deg 5.913 r_scangle_it 1.731 r_angle_refined_deg 1.198 r_scbond_it 1.047 r_mcangle_it 0.779 r_mcbond_it 0.412 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.62 r_dihedral_angle_4_deg 19.451 r_dihedral_angle_3_deg 17.68 r_dihedral_angle_1_deg 5.913 r_scangle_it 1.731 r_angle_refined_deg 1.198 r_scbond_it 1.047 r_mcangle_it 0.779 r_mcbond_it 0.412 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21686 Nucleic Acid Atoms Solvent Atoms 850 Heterogen Atoms 230
Software Software Software Name Purpose REFMAC refinement