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Coriolopsis gallica Laccase T2 Copper Depleted at pH 4.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1V10 PDB ENTRY 1V10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 PEG 1000, PEG 8000, pH 4.5
Crystal Properties Matthews coefficient Solvent content 3.5 64.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.02 α = 90 b = 85.39 β = 90 c = 151.53 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE YALE MIRRORS 2006-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200H
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 34.69 96.7 0.11 6.5 3.5 30457 1.6 37.97
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.48 97.7 0.47 1.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1V10 2.3 75.76 28464 1512 90.52 0.195 0.19323 0.1959 0.22836 0.2316 RANDOM 26.962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.8 4.56 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.582 r_dihedral_angle_4_deg 19.905 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 6.386 r_scangle_it 2.138 r_scbond_it 1.403 r_angle_refined_deg 1.332 r_mcangle_it 0.97 r_mcbond_it 0.525 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.582 r_dihedral_angle_4_deg 19.905 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 6.386 r_scangle_it 2.138 r_scbond_it 1.403 r_angle_refined_deg 1.332 r_mcangle_it 0.97 r_mcbond_it 0.525 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3727 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing