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Structure of Chloroflexus aggregans Cagg_3753 LOV domain C85A variant (CagFbFP) with 6,7-Dimethyl-8-ribityllumazine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2.0 M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.34 47.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.146 α = 90 b = 110.352 β = 90 c = 38.906 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2025-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17UM 0.97919 SSRF BL17UM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.274 55.176 91.9 0.131 0.139 0.046 0.999 10.4 8.4 42328
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.274 1.413 54.8 1.033 1.147 0.486 0.649 1.7 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.274 55.176 42327 2128 68.354 0.175 0.1736 0.1828 0.2027 0.2064 11.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.003 -0.003 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.961 r_dihedral_angle_3_deg 10.939 r_dihedral_angle_1_deg 7.949 r_dihedral_angle_2_deg 5.492 r_lrange_it 4.132 r_lrange_other 4.131 r_scangle_it 2.813 r_scangle_other 2.812 r_mcangle_it 1.936 r_mcangle_other 1.936
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.961 r_dihedral_angle_3_deg 10.939 r_dihedral_angle_1_deg 7.949 r_dihedral_angle_2_deg 5.492 r_lrange_it 4.132 r_lrange_other 4.131 r_scangle_it 2.813 r_scangle_other 2.812 r_mcangle_it 1.936 r_mcangle_other 1.936 r_scbond_it 1.907 r_scbond_other 1.906 r_angle_refined_deg 1.372 r_mcbond_it 1.29 r_mcbond_other 1.279 r_angle_other_deg 0.702 r_nbd_refined 0.23 r_symmetry_nbd_other 0.213 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.153 r_nbd_other 0.153 r_symmetry_xyhbond_nbd_refined 0.103 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.081 r_symmetry_nbd_refined 0.045 r_gen_planes_refined 0.012 r_bond_refined_d 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1600 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing