☰ Navigation Tabs
5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3'
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 272D UDJ049 USED AS STARTING MODEL FOR REFINEMENT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 289 pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 289.0K
Crystal Properties Matthews coefficient Solvent content 2.03 39.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.106 α = 90 b = 36.455 β = 90 c = 52.559 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH 1996-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 15 96.7 0.054 25 3.6 17760 17760
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.15 1.18 94.7 0.158 11.71 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION NONE UDJ049 USED AS STARTING MODEL FOR REFINEMENT 1.15 10 17700 16727 96 0.1722 0.1686
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 2 527.61 208
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.155 s_approx_iso_adps 0.067 s_similar_dist 0.052 s_anti_bump_dis_restr 0.042 s_similar_adp_cmpnt 0.025 s_bond_d 0.017 s_from_restr_planes 0.015 s_rigid_bond_adp_cmpnt 0.004 s_angle_d s_zero_chiral_vol
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 416 Solvent Atoms 116 Heterogen Atoms 2
Software Software Software Name Purpose SHELXL-93 refinement DENZO data reduction CCP4 data scaling