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Crystal structure of Bcl-xL in complex with inhibitor (Compound 2).
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PQ1 PDB ENTRY 1PQ1 CHAIN A.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.2 M (NH4)2 SO4, 0.1 M BIS TRIS, PH 5.5
Crystal Properties Matthews coefficient Solvent content 3 59.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.2 α = 90 b = 65.2 β = 90 c = 117.21 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2006-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 46.1 99.4 0.09 16.62 7.45 17277 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.57 94.2 0.9 2.58 7.14
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1PQ1 CHAIN A. 2.48 46.103 2 17274 871 99.42 0.2215 0.2214 0.2204 0.2607 0.2411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.667 f_angle_d 1.312 f_chiral_restr 0.082 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2334 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 82
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing