X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2980.2 M sodium formate, 18% w/v PEG 8000, 10% w/v sucrose, VAPOR DIFFUSION, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.9858.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.666α = 90
b = 89.666β = 90
c = 91.87γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2010-06-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.0APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.93092.143406622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.93100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.929.6534066244999.930.19710.19710.19530.2204RANDOM38.4224
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.870.430.87-1.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.372
r_dihedral_angle_4_deg17.808
r_dihedral_angle_3_deg11.944
r_dihedral_angle_1_deg5.199
r_scangle_it4.088
r_scbond_it2.453
r_mcangle_it1.944
r_angle_refined_deg1.281
r_mcbond_it1.056
r_angle_other_deg0.801
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.372
r_dihedral_angle_4_deg17.808
r_dihedral_angle_3_deg11.944
r_dihedral_angle_1_deg5.199
r_scangle_it4.088
r_scbond_it2.453
r_mcangle_it1.944
r_angle_refined_deg1.281
r_mcbond_it1.056
r_angle_other_deg0.801
r_mcbond_other0.229
r_chiral_restr0.081
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2316
Nucleic Acid Atoms
Solvent Atoms158
Heterogen Atoms3

Software

Software
Software NamePurpose
DENZOdata reduction
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
SCALEPACKdata scaling