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Crystal structure of protein phosphatase ABI2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 0.2 M sodium formate, 18% w/v PEG 8000, 10% w/v sucrose, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.98 58.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.666 α = 90 b = 89.666 β = 90 c = 91.87 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2010-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 92.14 34066 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 29.65 34066 2449 99.93 0.1971 0.1971 0.1953 0.2004 0.2204 0.2241 RANDOM 38.4224
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.43 0.87 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.372 r_dihedral_angle_4_deg 17.808 r_dihedral_angle_3_deg 11.944 r_dihedral_angle_1_deg 5.199 r_scangle_it 4.088 r_scbond_it 2.453 r_mcangle_it 1.944 r_angle_refined_deg 1.281 r_mcbond_it 1.056 r_angle_other_deg 0.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.372 r_dihedral_angle_4_deg 17.808 r_dihedral_angle_3_deg 11.944 r_dihedral_angle_1_deg 5.199 r_scangle_it 4.088 r_scbond_it 2.453 r_mcangle_it 1.944 r_angle_refined_deg 1.281 r_mcbond_it 1.056 r_angle_other_deg 0.801 r_mcbond_other 0.229 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2316 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection SCALEPACK data scaling