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X-ray Crystal Structure of Xenon-Pressurized Phenol Hydroxylase from Pseudomonas sp. OX1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2INN PDB Entry 2INN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 100 mM Tris (pH 7.0), 150 mM Na2MoO4, 5% glycerol (v/v), 19% PEG 8000 (w/v), VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.41 48.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.942 α = 90 b = 141.761 β = 90 c = 181.207 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Mirrors 2006-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.979 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 38 92.5 0.067 149674 138448
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 82.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 2INN 1.95 38 149674 138448 7356 92.51 0.18521 0.18521 0.18295 0.22774 0.1846 RANDOM 28.577
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.14 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.097 r_dihedral_angle_4_deg 20.175 r_dihedral_angle_3_deg 17.283 r_dihedral_angle_1_deg 6.075 r_scangle_it 4.956 r_scbond_it 3.155 r_mcangle_it 1.784 r_angle_refined_deg 1.7 r_mcbond_it 0.931 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.097 r_dihedral_angle_4_deg 20.175 r_dihedral_angle_3_deg 17.283 r_dihedral_angle_1_deg 6.075 r_scangle_it 4.956 r_scbond_it 3.155 r_mcangle_it 1.784 r_angle_refined_deg 1.7 r_mcbond_it 0.931 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.252 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.136 r_metal_ion_refined 0.037 r_bond_refined_d 0.018 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15331 Nucleic Acid Atoms Solvent Atoms 588 Heterogen Atoms 120
Software Software Software Name Purpose Blu-Ice data collection EPMR phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling