☰ Navigation Tabs
Crystal structure of E. coli HypF with AMP and carbamoyl phosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.1 M HEPES, pH 8.5, 20 mM magnesium chloride, 2.5% w/v isopropanol, 10% w/v ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.47 50.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.361 α = 90 b = 75.628 β = 90 c = 200.668 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2010-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 100.334 50071
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.92 100.33 47277 2532 90.46 0.17955 0.17712 0.1849 0.22543 0.2338 RANDOM 31.442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 1.4 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.244 r_dihedral_angle_4_deg 15.691 r_dihedral_angle_3_deg 15.46 r_dihedral_angle_1_deg 6.003 r_scangle_it 3.835 r_rigid_bond_restr 2.591 r_scbond_it 2.505 r_angle_refined_deg 1.648 r_mcangle_it 1.58 r_mcbond_it 0.992
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.244 r_dihedral_angle_4_deg 15.691 r_dihedral_angle_3_deg 15.46 r_dihedral_angle_1_deg 6.003 r_scangle_it 3.835 r_rigid_bond_restr 2.591 r_scbond_it 2.505 r_angle_refined_deg 1.648 r_mcangle_it 1.58 r_mcbond_it 0.992 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.246 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.209 r_xyhbond_nbd_refined 0.196 r_chiral_restr 0.141 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4922 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MxDC data collection