3TTF
Crystal structure of E. coli HypF with AMP and carbamoyl phosphate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Actin-like ATPases | 8092444 | 3000092 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | HypF zinc finger | 8092441 | 3002027 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | YrdC/RibB-like | 8092438 | 3000166 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | HypF zinc finger | 8092442 | 3002027 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Actin-like ATPases | 8092445 | 3000092 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sua5_yciO_yrdC | e3ttfA5 | A: a+b complex topology | X: YrdC/RibB (From Topology) | H: YrdC/RibB (From Topology) | T: YrdC/RibB | F: Sua5_yciO_yrdC | ECOD (1.6) |
A | Peptidase_M22_C_1 | e3ttfA7 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Peptidase_M22_C_1 | ECOD (1.6) |
A | HypF_1 | e3ttfA8 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: HypF_1 | ECOD (1.6) |
A | zf-HYPF | e3ttfA6 | A: few secondary structure elements | X: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | H: Zinc finger domain in hydrogenase maturation protein HypF (From Topology) | T: Zinc finger domain in hydrogenase maturation protein HypF | F: zf-HYPF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.870.30 | Alpha Beta | Alpha-Beta Complex | DHBP synthase | CATH (4.3.0) | |
A | 3.30.110.120 | Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | CATH (4.3.0) | |
A | 3.30.420.360 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
A | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22521 | Carbamoyltransferase, Kae1-like Domain, second subdomain (HypF_C_2) | Carbamoyltransferase, Kae1-like Domain, second subdomain | This domain is found at the C-terminal end of Carbamoyltransferase from Caldanaerobacter subterraneus (HypF, Swiss:Q8RDB0) and similar prokaryotic sequences. HypF is involved in the biosynthesis of the nitrile group as a precursor of the cyano groups ... | Domain | |
PF07503 | HypF finger (zf-HYPF) | HypF finger | The HypF family of proteins are involved in the maturation and regulation of hydrogenase ([1]). In the N-terminus they appear to have two Zinc finger domains, as modelled by this family. | Domain | |
PF17788 | HypF Kae1-like domain (HypF_C) | HypF Kae1-like domain | This domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain [1]. | Domain | |
PF01300 | Telomere recombination (Sua5_yciO_yrdC) | Telomere recombination | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041440 | HypF, Kae1-like domain | Domain | |
IPR051060 | Carbamoyltransferase HypF-like | Family | |
IPR036046 | Acylphosphatase-like domain superfamily | Homologous Superfamily | |
IPR004421 | Carbamoyltransferase, HypF-type | Family | |
IPR017945 | DHBP synthase RibB-like alpha/beta domain superfamily | Homologous Superfamily | |
IPR006070 | Threonylcarbamoyl-AMP synthase-like domain | Domain | |
IPR011125 | Zinc finger, HypF-type | Domain | |
IPR017968 | Acylphosphatase, conserved site | Conserved Site | |
IPR001792 | Acylphosphatase-like domain | Domain |