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Crystal structure of active caspase-6 in complex with Ac-VEID-CHO inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.05 M calcium acetate, 0.1 M sodium cacodylate pH 5.5 and 12% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.05 40.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.455 α = 90 b = 89.5 β = 111.73 c = 61.245 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 19.904 92.1 0.102 13.6 6 40267 40267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 68.7 0.313 0.313 2.4 4.5 4362
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 19.9 40238 2030 91.95 0.1514 0.1496 0.1566 0.1854 0.1922 RANDOM 10.7916
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.12 0.35 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.295 r_dihedral_angle_4_deg 15.526 r_dihedral_angle_3_deg 11.534 r_dihedral_angle_1_deg 5.943 r_scangle_it 2.182 r_scbond_it 1.303 r_angle_refined_deg 1.05 r_angle_other_deg 0.785 r_mcangle_it 0.781 r_mcbond_it 0.393
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.295 r_dihedral_angle_4_deg 15.526 r_dihedral_angle_3_deg 11.534 r_dihedral_angle_1_deg 5.943 r_scangle_it 2.182 r_scbond_it 1.303 r_angle_refined_deg 1.05 r_angle_other_deg 0.785 r_mcangle_it 0.781 r_mcbond_it 0.393 r_chiral_restr 0.076 r_mcbond_other 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3879 Nucleic Acid Atoms Solvent Atoms 613 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection