X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3M0APDB entry 3M0A (TRAF2:ciap2)

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62770.15M AmSO4, 0.1M MES, 15% PEG 4000, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
358.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.867α = 90
b = 91.867β = 90
c = 88.702γ = 90
Symmetry
Space GroupI 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152009-08-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29ANSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85099.80.0970.0628.96.1913712
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.997.80.4784.4899

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3M0A (TRAF2:ciap2)2.832.5875343695.540.2040.1970.247RANDOM52.197
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.83-1.833.66
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.749
r_dihedral_angle_3_deg22.977
r_dihedral_angle_4_deg16.446
r_dihedral_angle_1_deg6.294
r_scangle_it4.461
r_scbond_it2.517
r_angle_refined_deg1.622
r_mcangle_it1.288
r_mcbond_it0.64
r_chiral_restr0.121
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.749
r_dihedral_angle_3_deg22.977
r_dihedral_angle_4_deg16.446
r_dihedral_angle_1_deg6.294
r_scangle_it4.461
r_scbond_it2.517
r_angle_refined_deg1.622
r_mcangle_it1.288
r_mcbond_it0.64
r_chiral_restr0.121
r_bond_refined_d0.011
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2046
Nucleic Acid Atoms
Solvent Atoms42
Heterogen Atoms1

Software

Software
Software NamePurpose
ADSCdata collection
MOLREPphasing
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement