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Crystal structure of the TRAF1:TRAF2:cIAP2 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3M0A PDB entry 3M0A (TRAF2:ciap2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 0.15M AmSO4, 0.1M MES, 15% PEG 4000, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3 58.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.867 α = 90 b = 91.867 β = 90 c = 88.702 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.8 0.097 0.062 8.9 6.1 9137 1 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 97.8 0.478 4.4 899
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3M0A (TRAF2:ciap2) 2.8 32.5 8753 436 95.54 0.204 0.197 0.196 0.247 0.2722 RANDOM 52.197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.83 -1.83 3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.749 r_dihedral_angle_3_deg 22.977 r_dihedral_angle_4_deg 16.446 r_dihedral_angle_1_deg 6.294 r_scangle_it 4.461 r_scbond_it 2.517 r_angle_refined_deg 1.622 r_mcangle_it 1.288 r_mcbond_it 0.64 r_chiral_restr 0.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.749 r_dihedral_angle_3_deg 22.977 r_dihedral_angle_4_deg 16.446 r_dihedral_angle_1_deg 6.294 r_scangle_it 4.461 r_scbond_it 2.517 r_angle_refined_deg 1.622 r_mcangle_it 1.288 r_mcbond_it 0.64 r_chiral_restr 0.121 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2046 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 1
Software Software Software Name Purpose ADSC data collection MOLREP phasing HKL-2000 data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement