☰ Navigation Tabs
Crystal Structure of HLA B*3501 in complex with influenza NP418 epitope from 1918 strain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FYY pdb entry 2FYY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 277 15-25% PEG 4000, 0.2M NH4Acetate, 0.1M Na-Citrate, pH 5.6, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.6 52.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.22 α = 90 b = 82.29 β = 90 c = 110.93 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 1.0000 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 66.09 99.8 0.102 17.21 32333 -3 26.342
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 99.8 0.481 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2FYY 2 66.09 30736 1642 99.8 0.216 0.214 0.252 0.239 RANDOM 12.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.93 -0.92 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.024 r_dihedral_angle_4_deg 18.743 r_dihedral_angle_3_deg 15.737 r_dihedral_angle_1_deg 6.523 r_scangle_it 3.407 r_scbond_it 2.116 r_angle_refined_deg 1.454 r_mcangle_it 1.388 r_mcbond_it 0.769 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.024 r_dihedral_angle_4_deg 18.743 r_dihedral_angle_3_deg 15.737 r_dihedral_angle_1_deg 6.523 r_scangle_it 3.407 r_scbond_it 2.116 r_angle_refined_deg 1.454 r_mcangle_it 1.388 r_mcbond_it 0.769 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3166 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Bue data collection XDS data reduction