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An extraordinary mechanism of DNA perturbation exhibited by the rare-cutting HNH restriction endonuclease PacI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 20-24% PEG 3000, 2-5% ethylene glycol, 0.1M sodium citrate., pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.88 57.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.908 α = 90 b = 115.788 β = 90 c = 114.689 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2009-10-31 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RIGAKU SATURN 944 2009-01-01 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2009-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9774 ALS 5.0.1 2 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418 3 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0719 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 1.83 50 87.9 0.066 26 9.8 19597 2 26.25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3 1.83 1.9 39.2 0.25 2.26 2.7 2194
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.97 28.95 3 19083 16445 888 96.99 0.186 0.186 0.1843 0.2179 0.21725 0.2438 RANDOM 41.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 3.35 -3.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.365 r_dihedral_angle_4_deg 21.948 r_dihedral_angle_3_deg 16.333 r_dihedral_angle_1_deg 6.338 r_scangle_it 4.493 r_scbond_it 2.99 r_mcangle_it 2.139 r_rigid_bond_restr 1.674 r_angle_refined_deg 1.542 r_mcbond_it 1.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.365 r_dihedral_angle_4_deg 21.948 r_dihedral_angle_3_deg 16.333 r_dihedral_angle_1_deg 6.338 r_scangle_it 4.493 r_scbond_it 2.99 r_mcangle_it 2.139 r_rigid_bond_restr 1.674 r_angle_refined_deg 1.542 r_mcbond_it 1.163 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1102 Nucleic Acid Atoms 366 Solvent Atoms 89 Heterogen Atoms 3
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling