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CRYSTAL STRUCTURE OF ABC SUGAR TRANSPORTER SUBUNIT FROM Rhodobacter sphaeroides 2.4.1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 294 200MM SODIUM ACETATE, PH 4.6, 100MM TRIS-HCL, PH 8.5, 10% GLYCEROL, 30% PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.62 53.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.31 α = 106.41 b = 75.712 β = 115.49 c = 77.438 γ = 96.71
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRRORS 2009-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.8 0.14 3.5 3.9 56552 -5 31.58
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.36 98.8 1.1 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 20 52491 1661 95.9 0.19504 0.19321 0.1938 0.25436 0.2569 RANDOM 36.962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.92 -0.25 -0.43 1.45 -0.27 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.05 r_dihedral_angle_3_deg 17.859 r_dihedral_angle_4_deg 12.762 r_scangle_it 11.125 r_scbond_it 8.151 r_mcangle_it 6.511 r_dihedral_angle_1_deg 5.793 r_mcbond_it 4.65 r_angle_refined_deg 1.234 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.05 r_dihedral_angle_3_deg 17.859 r_dihedral_angle_4_deg 12.762 r_scangle_it 11.125 r_scbond_it 8.151 r_mcangle_it 6.511 r_dihedral_angle_1_deg 5.793 r_mcbond_it 4.65 r_angle_refined_deg 1.234 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.252 r_xyhbond_nbd_refined 0.164 r_nbd_refined 0.148 r_symmetry_vdw_refined 0.137 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8608 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 40
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing