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Frog M-ferritin, EEH mutant, with cobalt
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KA3 PDB entry 3KA3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 2M MgCl2, 0.1M Bicine pH 9.0, 0.1M CoCl2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.11 60.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.452 α = 90 b = 183.452 β = 90 c = 183.452 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Mirror 1: plane parabola Pt and Rh-coated Invar steel. Mirror 2: torroid Pt and Rh-coated Si M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 100 0.088 0.088 25.3 15.6 47219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.53 100 0.798 0.798 1 15.1 6773
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3KA3 1.45 50 47201 2387 99.91 0.131 0.129 0.1302 0.165 0.1622 RANDOM 15.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.609 r_dihedral_angle_4_deg 20.736 r_dihedral_angle_3_deg 13.863 r_sphericity_free 13.342 r_scangle_it 6.872 r_dihedral_angle_1_deg 5.136 r_scbond_it 5.007 r_sphericity_bonded 4.18 r_mcangle_it 2.939 r_rigid_bond_restr 2.422
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.609 r_dihedral_angle_4_deg 20.736 r_dihedral_angle_3_deg 13.863 r_sphericity_free 13.342 r_scangle_it 6.872 r_dihedral_angle_1_deg 5.136 r_scbond_it 5.007 r_sphericity_bonded 4.18 r_mcangle_it 2.939 r_rigid_bond_restr 2.422 r_mcbond_it 2.146 r_angle_other_deg 2.035 r_angle_refined_deg 1.949 r_mcbond_other 0.915 r_chiral_restr 0.153 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1429 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 17
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction