☰ Navigation Tabs
The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3J6R
Sample Quasi-HPV16 complexed with H16.U4 Fab Sample Components Human papillomavirus H16.U4 antibody
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument GATAN CRYOPLUNGE 3 Cryogen Name ETHANE Sample Vitrification Details Plunged into liquid ethane (GATAN CRYOPLUNGE 3).
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 5806 Reported Resolution (Å) 12 Resolution Method FSC 0.5 CUT-OFF Other Details (Single particle details: The particles were selected using semi-automatic program e2boxer.py.) (Single particle--Applied symmetry: I) Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (3J6R) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details REFINEMENT PROTOCOL--rigid body
Data Acquisition Detector Type GATAN ULTRASCAN 4000 (4k x 4k) Electron Dose (electrons/Å**2) 15
Imaging Experiment 1 Date of Experiment 2014-07-22 Temperature (Kelvin) 95 Microscope Model JEOL 2100 Minimum Defocus (nm) 1600 Maximum Defocus (nm) 5430 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 50000 Calibrated Magnification Source LAB6 Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL FITTING Situs MODEL FITTING UCSF Chimera RECONSTRUCTION Auto3DEM RECONSTRUCTION EMAN 2 RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details each particle