3JBA
The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth A] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | V-set | e3jbaL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth H] | V-set_12 | e3jbaH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
D [auth A] | Late_protein_L1 | e3jbaA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
E | Late_protein_L1 | e3jbaE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
G [auth C] | Late_protein_L1 | e3jbaC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
H [auth F] | Late_protein_L1 | e3jbaF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
C [auth B] | Late_protein_L1 | e3jbaB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
F [auth D] | Late_protein_L1 | e3jbaD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Late_protein_L1 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth L] | H16.U4 Fv | V-KAPPA | Mus musculus (house mouse) | IGKV8-30*01, IGKJ5*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202433-0) |
B [auth H] | H16.U4 Fv | VH | Mus musculus (house mouse) | IGHV5-9-1*01, IGHV5-9-3*01, IGHJ2*01 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202433-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L] | Light Chain | IGKV8 | Kappa | major capsid protein l1 | SAbDab (2024-08-23) |
B [auth H] | Heavy Chain | IGHV5 | - | major capsid protein l1 | SAbDab (2024-08-23) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00500 | L1 (late) protein (Late_protein_L1) | L1 (late) protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036973 | Major capsid L1 (late) superfamily, Papillomavirus | Homologous Superfamily | |
IPR011222 | Double-stranded DNA virus, group I, capsid | Homologous Superfamily | |
IPR002210 | Major capsid L1 (late) protein, Papillomavirus | Family |