☰ Navigation Tabs
Staphylococcus aureus pathogenicity island 3 ORF9 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 3 M sodium nitrate, 0.1 M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.5 50.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.739 α = 90 b = 78.578 β = 107.41 c = 83.541 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 125 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2009-01-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 96.7 0.043 22.4 3.5 17190 17190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.54 83.8 0.391 2.8 3.2 730
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.5 30 16293 889 96.63 0.23043 0.22776 0.2256 0.27638 0.2762 RANDOM 61.175
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.59 -4.4 -1.94 -5.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.568 r_dihedral_angle_4_deg 27.189 r_dihedral_angle_3_deg 19.767 r_dihedral_angle_1_deg 9.604 r_scangle_it 3.315 r_scbond_it 1.982 r_mcangle_it 1.674 r_angle_refined_deg 1.403 r_mcbond_it 0.893 r_symmetry_hbond_refined 0.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.568 r_dihedral_angle_4_deg 27.189 r_dihedral_angle_3_deg 19.767 r_dihedral_angle_1_deg 9.604 r_scangle_it 3.315 r_scbond_it 1.982 r_mcangle_it 1.674 r_angle_refined_deg 1.403 r_mcbond_it 0.893 r_symmetry_hbond_refined 0.338 r_nbtor_refined 0.336 r_nbd_refined 0.294 r_symmetry_vdw_refined 0.283 r_xyhbond_nbd_refined 0.232 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3083 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 2
Software Software Software Name Purpose CrystalClear data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling