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Crystal Structure of holo PfACP Disulfide-Linked Dimer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T8K pdb entry 1T8K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 296 3.06M NaMalonate, 2mM BME, 1mM CuCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 3.14 60.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.675 α = 90 b = 48.675 β = 90 c = 97.588 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD Bruker Platinum 135 mirrors 2006-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54168
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 43.56 99.6 0.0679 12.95 5.64 3997 3981
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.49 2.59 98.7 0.3336 3.14 4.09 447
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1T8K 2.55 43.56 3550 159 99.78 0.2418 0.24062 0.2396 0.26703 0.2715 RANDOM 70.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.748 r_dihedral_angle_3_deg 14.982 r_dihedral_angle_1_deg 4.019 r_mcangle_it 1.212 r_angle_refined_deg 1.005 r_mcbond_it 0.679 r_scangle_it 0.599 r_scbond_it 0.392 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.748 r_dihedral_angle_3_deg 14.982 r_dihedral_angle_1_deg 4.019 r_mcangle_it 1.212 r_angle_refined_deg 1.005 r_mcbond_it 0.679 r_scangle_it 0.599 r_scbond_it 0.392 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.213 r_symmetry_vdw_refined 0.191 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 642 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 22
Software Software Software Name Purpose PROTEUM PLUS data collection PHASER phasing REFMAC refinement SAINT data reduction PROTEUM PLUS data scaling