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Crystal Structure of the galactoside O-acetyltransferase from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2M Na diH Phosphate, 20% P3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.33 47.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.761 α = 90 b = 75.761 β = 90 c = 93.878 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2008-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 50 99.4 0.093 0.093 30.5 5.4 27020 27020 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.6 75.4 0.195 0.195 4.1 3.6 504
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 50 25203 25203 1330 99.97 0.16011 0.16011 0.15865 0.18689 0.2129 RANDOM 18.169
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.06 -0.11 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.89 r_dihedral_angle_4_deg 14.605 r_dihedral_angle_3_deg 13.454 r_dihedral_angle_1_deg 6.017 r_scangle_it 5.39 r_angle_other_deg 4.273 r_scbond_it 3.343 r_mcangle_it 2.011 r_angle_refined_deg 1.63 r_mcbond_it 1.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.89 r_dihedral_angle_4_deg 14.605 r_dihedral_angle_3_deg 13.454 r_dihedral_angle_1_deg 6.017 r_scangle_it 5.39 r_angle_other_deg 4.273 r_scbond_it 3.343 r_mcangle_it 2.011 r_angle_refined_deg 1.63 r_mcbond_it 1.107 r_chiral_restr 0.1 r_bond_refined_d 0.02 r_gen_planes_other 0.011 r_gen_planes_refined 0.009 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1469 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing SHELXD phasing SHELXE model building RESOLVE model building Coot model building MLPHARE phasing DM model building ARP/wARP model building CCP4 model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling RESOLVE phasing DM phasing CCP4 phasing