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The crystal structure of human acyl-CoenzymeA binding domain containing 5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HBK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.2M Mg(ac)2; 0.1M cacodylate pH 6.5; 20% PEG 8K, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.24 45.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.751 α = 90 b = 34.064 β = 102.16 c = 54.877 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99988 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.78 91.8 0.091 0.091 6.5 25392
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 54.3 0.539 0.539 1.6 2.8 6153
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1HBK 1.7 28.78 24120 24120 1265 92.1 0.21458 0.21458 0.21212 0.2421 0.25926 0.2885 RANDOM 19.961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 0.23 1.43 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.254 r_dihedral_angle_4_deg 23.439 r_dihedral_angle_3_deg 14.955 r_scangle_it 10.303 r_scbond_it 8.271 r_mcangle_it 6.882 r_mcbond_it 5.308 r_dihedral_angle_1_deg 4.773 r_mcbond_other 2.885 r_angle_refined_deg 1.571
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.254 r_dihedral_angle_4_deg 23.439 r_dihedral_angle_3_deg 14.955 r_scangle_it 10.303 r_scbond_it 8.271 r_mcangle_it 6.882 r_mcbond_it 5.308 r_dihedral_angle_1_deg 4.773 r_mcbond_other 2.885 r_angle_refined_deg 1.571 r_angle_other_deg 0.931 r_chiral_restr 0.099 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1419 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 82
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling