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Crystal structure of Glycosylated K135E PEB3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HXW PDB ENTRY 2HXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 294 18% [w/v] polyethylene glycol 3350, 0.2 M di-ammonium hydrogen citrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.45 49.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.58 α = 90 b = 101.962 β = 108.88 c = 56.809 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Vertical and Horizontal focusing Mirrors 2007-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 1.98 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 98 0.085 17.1 3.4 35349 26.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2HXW 2 20 33402 1750 97.47 0.21687 0.21591 0.23492 0.2512 RANDOM 36.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.58 -3.65 -2.85 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.341 r_dihedral_angle_3_deg 15.567 r_dihedral_angle_4_deg 9.149 r_dihedral_angle_1_deg 5.203 r_angle_refined_deg 1.099 r_scangle_it 1.045 r_mcangle_it 0.676 r_scbond_it 0.618 r_mcbond_it 0.367 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.341 r_dihedral_angle_3_deg 15.567 r_dihedral_angle_4_deg 9.149 r_dihedral_angle_1_deg 5.203 r_angle_refined_deg 1.099 r_scangle_it 1.045 r_mcangle_it 0.676 r_scbond_it 0.618 r_mcbond_it 0.367 r_chiral_restr 0.074 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3622 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms 84
Software Software Software Name Purpose SGXCAT data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling