☰ Navigation Tabs
Human cytochrome P450 2E1 in complex with the inhibitor indazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2P85 PDB entry 2P85
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 11% v/v isopropanol, 6% PEG MME 2000, 0.1M Na HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.58 52.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.083 α = 90 b = 71.083 β = 90 c = 225.17 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97900 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 112.51 99.7 0.08 15.5 5.9 56315 56268 41.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.26 99.3 0.338 3.5 3.5 4154
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2P85 2.2 41.78 56189 2847 99.68 0.223 0.22 0.283 0.2634 RANDOM 39.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.005 r_dihedral_angle_4_deg 22.746 r_dihedral_angle_3_deg 19.45 r_dihedral_angle_1_deg 8.968 r_scangle_it 2.38 r_angle_refined_deg 1.621 r_scbond_it 1.553 r_mcangle_it 1.126 r_mcbond_it 0.664 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.005 r_dihedral_angle_4_deg 22.746 r_dihedral_angle_3_deg 19.45 r_dihedral_angle_1_deg 8.968 r_scangle_it 2.38 r_angle_refined_deg 1.621 r_scbond_it 1.553 r_mcangle_it 1.126 r_mcbond_it 0.664 r_nbtor_refined 0.305 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.134 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7551 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction SCALA data scaling PHASER phasing