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Structure of DocH66Y in complex with the C-terminal domain of Phd
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 35% PEG4000, 0.2M ammonium acetate, 0.1M acetate, pH4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 1.91 35.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.944 α = 90 b = 38.201 β = 99.26 c = 63.734 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-04-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.9189, 0.9116 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 11 0.09 9 7.1 29371 29371 -3 19.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 0.95 2 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 11 26810 26810 1444 96.53 0.18317 0.18317 0.18232 0.1836 0.19849 0.199 RANDOM 21.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.06 0.57 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.419 r_dihedral_angle_4_deg 22.723 r_dihedral_angle_3_deg 12.834 r_dihedral_angle_1_deg 4.76 r_scangle_it 2.939 r_scbond_it 1.987 r_angle_refined_deg 1.237 r_mcangle_it 1.022 r_mcbond_it 0.64 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.419 r_dihedral_angle_4_deg 22.723 r_dihedral_angle_3_deg 12.834 r_dihedral_angle_1_deg 4.76 r_scangle_it 2.939 r_scbond_it 1.987 r_angle_refined_deg 1.237 r_mcangle_it 1.022 r_mcbond_it 0.64 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.264 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2119 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling Auto-Rickshaw phasing