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CRYSTAL STRUCTURE OF A PUTATIVE RNFG SUBUNIT OF ELECTRON TRANSPORT COMPLEX (TM0246) FROM THERMOTOGA MARITIMA AT 1.65 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 25.0% polyethylene glycol 4000, 0.2M ammonium sulfate, 0.1M sodium acetate pH 4.6, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.125 α = 90 b = 103.827 β = 90 c = 44.035 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91162,0.97932,0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 29.148 100 0.068 0.068 7.5 3.7 25591 18.735
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 100 0.497 0.497 1.5 3.7 1876
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 29.148 25581 1304 99.94 0.177 0.176 0.181 0.205 0.2113 RANDOM 16.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.35 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.765 r_dihedral_angle_4_deg 17.145 r_dihedral_angle_3_deg 13.606 r_scangle_it 6.114 r_dihedral_angle_1_deg 5.308 r_scbond_it 4.256 r_mcangle_it 2.989 r_mcbond_it 2.053 r_angle_refined_deg 1.481 r_angle_other_deg 0.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.765 r_dihedral_angle_4_deg 17.145 r_dihedral_angle_3_deg 13.606 r_scangle_it 6.114 r_dihedral_angle_1_deg 5.308 r_scbond_it 4.256 r_mcangle_it 2.989 r_mcbond_it 2.053 r_angle_refined_deg 1.481 r_angle_other_deg 0.898 r_mcbond_other 0.489 r_symmetry_vdw_other 0.314 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.216 r_nbd_other 0.199 r_nbtor_refined 0.184 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.092 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1294 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing