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Prosubtilisin Substrate Complex of Subtilisin SUBT_BACAM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 298 18% PEG8K, 0.2 M Zn Acetate, 0.1 M Na Cacodylate, pH 6.5, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.08 40.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.195 α = 90 b = 72.941 β = 90 c = 93.112 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2006-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 1.0 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 50 99.7 0.069 17 5.5 32590 32590
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.71 1.77 99.4 0.293 4.3 3202
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.71 10 32590 32338 1641 99.47 0.199 0.193 0.191 0.1916 0.232 0.2308 RANDOM 21.645
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.86 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.352 r_dihedral_angle_3_deg 14.648 r_dihedral_angle_1_deg 5.628 r_dihedral_angle_4_deg 4.593 r_scangle_it 3.872 r_scbond_it 2.659 r_mcangle_it 1.684 r_angle_refined_deg 1.506 r_mcbond_it 1.036 r_symmetry_vdw_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.352 r_dihedral_angle_3_deg 14.648 r_dihedral_angle_1_deg 5.628 r_dihedral_angle_4_deg 4.593 r_scangle_it 3.872 r_scbond_it 2.659 r_mcangle_it 1.684 r_angle_refined_deg 1.506 r_mcbond_it 1.036 r_symmetry_vdw_refined 0.327 r_nbtor_refined 0.304 r_symmetry_metal_ion_refined 0.275 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.127 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.108 r_metal_ion_refined 0.042 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2401 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection