☰ Navigation Tabs
Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 289 0.1M Acetate, 0.2M Zinc acetate, 10% PEG 3000, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.43 49.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.885 α = 90 b = 80.619 β = 110.91 c = 115.826 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 35.25 96.7 0.074 24.4 3.6 58325 58325
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.4 99.1 0.4 2.9 3.4 3961
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.35 35.25 55281 55281 2938 96.62 0.2117 0.2117 0.20888 0.2556 0.26315 0.2964 RANDOM 37.675
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.2 -0.02 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.222 r_dihedral_angle_3_deg 21.523 r_dihedral_angle_4_deg 19.528 r_dihedral_angle_1_deg 7.488 r_mcangle_it 1.775 r_angle_refined_deg 1.713 r_scangle_it 1.613 r_mcbond_it 1.095 r_scbond_it 1.079 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.222 r_dihedral_angle_3_deg 21.523 r_dihedral_angle_4_deg 19.528 r_dihedral_angle_1_deg 7.488 r_mcangle_it 1.775 r_angle_refined_deg 1.713 r_scangle_it 1.613 r_mcbond_it 1.095 r_scbond_it 1.079 r_nbtor_refined 0.303 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.199 r_xyhbond_nbd_refined 0.153 r_symmetry_metal_ion_refined 0.129 r_metal_ion_refined 0.124 r_symmetry_hbond_refined 0.123 r_chiral_restr 0.121 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9450 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing RESOLVE phasing HKL-3000 phasing