X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1H0BPDB ENTRY 1H0B

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52930.2M Sodium dihydrogen phosphate monohydrate, 20% W/V PEG 3350, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3848.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.398α = 90
b = 111.874β = 90
c = 133.707γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATEMAR scanner 345 mm plateMirrors2007-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU ULTRAX 181.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15097.50.06212.53.5352603523263327.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.1899.20.28673.13.384888

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1H0B2.141.4249610266697.490.2050.188610.185960.23819RANDOM27.563
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.270.68-0.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.023
r_dihedral_angle_4_deg18.705
r_dihedral_angle_3_deg15.483
r_dihedral_angle_1_deg6.116
r_scangle_it2.724
r_scbond_it1.613
r_mcangle_it1.191
r_angle_refined_deg1.129
r_mcbond_it0.7
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.023
r_dihedral_angle_4_deg18.705
r_dihedral_angle_3_deg15.483
r_dihedral_angle_1_deg6.116
r_scangle_it2.724
r_scbond_it1.613
r_mcangle_it1.191
r_angle_refined_deg1.129
r_mcbond_it0.7
r_nbtor_refined0.302
r_symmetry_vdw_refined0.21
r_nbd_refined0.201
r_xyhbond_nbd_refined0.119
r_symmetry_hbond_refined0.119
r_chiral_restr0.077
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6769
Nucleic Acid Atoms
Solvent Atoms293
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
AUTOMARdata reduction
MOLREPphasing