☰ Navigation Tabs
Crystal structure of the CG11501 protein in P21212 spacegroup
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZZO PDB ENTRY 3ZZO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 100MM NA-ACETATE PH 4.6, 20 MM CACL2, 30% MPD
Crystal Properties Matthews coefficient Solvent content 1.99 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.43 α = 90 b = 78.29 β = 90 c = 21.72 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2007-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 41.81 99.5 0.07 19 6.8 15572 10.95
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 97.8 0.24 6.4 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZZO 1.45 20 14757 776 99.35 0.1614 0.15969 0.1666 0.19572 0.2008 RANDOM 12.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.199 r_dihedral_angle_4_deg 16.683 r_dihedral_angle_3_deg 12.96 r_dihedral_angle_1_deg 6.82 r_angle_refined_deg 1.988 r_angle_other_deg 1.309 r_chiral_restr 0.534 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.199 r_dihedral_angle_4_deg 16.683 r_dihedral_angle_3_deg 12.96 r_dihedral_angle_1_deg 6.82 r_angle_refined_deg 1.988 r_angle_other_deg 1.309 r_chiral_restr 0.534 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 732 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling AMoRE phasing