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Circular permutant of ribosomal protein S6, lacking edge strand beta- 2 of wild-type S6.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RIS PDB ENTRY 1RIS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.9M AMMONIUM SULPHATE, 0.1M MES PH 6.5, 8% 1,4 DIOXANE
Crystal Properties Matthews coefficient Solvent content 1.56 20.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 22.2 α = 90 b = 40.8 β = 90 c = 68.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.96 20 99.3 0.06 16 6 38300
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.96 0.99 98.2 0.65 3 4.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1RIS 0.96 20 38148 1932 99.3 0.1129 0.1129 0.1262 0.1369 0.1231 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 9 542.32 733.74
RMS Deviations Key Refinement Restraint Deviation s_anti_bump_dis_restr 0.112 s_approx_iso_adps 0.11 s_non_zero_chiral_vol 0.106 s_zero_chiral_vol 0.094 s_similar_adp_cmpnt 0.044 s_angle_d 0.033 s_from_restr_planes 0.0215 s_bond_d 0.016 s_rigid_bond_adp_cmpnt 0.007 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 606 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction XSCALE data scaling PHASER phasing