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Crystal structure of a glycoside hydrolase family 3 beta-glucosidase, Bgl1 from Hypocrea jecorina at 2.1A resolution.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 AS DESCRIBED IN THE PUBLICATION, pH 4
Crystal Properties Matthews coefficient Solvent content 1.93 36.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.065 α = 90 b = 82.404 β = 90 c = 136.722 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SX-165 2008-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-5 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.7 99 0.14 8.1 4.1 36726 3.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 95 0.38 3.1 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 136.72 34896 1829 98.77 0.17685 0.17446 0.175 0.22235 0.2239 RANDOM 15.046
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.459 r_dihedral_angle_4_deg 16.988 r_dihedral_angle_3_deg 11.904 r_dihedral_angle_1_deg 5.286 r_scangle_it 1.143 r_angle_refined_deg 1.025 r_scbond_it 0.711 r_mcangle_it 0.44 r_mcbond_it 0.236 r_chiral_restr 0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.459 r_dihedral_angle_4_deg 16.988 r_dihedral_angle_3_deg 11.904 r_dihedral_angle_1_deg 5.286 r_scangle_it 1.143 r_angle_refined_deg 1.025 r_scbond_it 0.711 r_mcangle_it 0.44 r_mcbond_it 0.236 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5307 Nucleic Acid Atoms Solvent Atoms 689 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing