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Crystal structure of ADP-ribosyl cyclase complexed with 8-bromo-ADP- ribose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R12 PDB ENTRY 1R12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1M IMIDAZOLE, PH 7.5, 12-14% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.86 56.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.682 α = 87.85 b = 76.818 β = 89.25 c = 140.333 γ = 89.12
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2011-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 96.8 0.09 16.1 4.1 75158 1 64.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 94.1 0.52 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1R12 2.6 29.73 71392 3763 96.33 0.20635 0.20289 0.1984 0.27148 0.2644 RANDOM 55.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.06 -0.06 0.11 0.23 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.852 r_dihedral_angle_4_deg 21.286 r_dihedral_angle_3_deg 18.929 r_dihedral_angle_1_deg 6.609 r_scangle_it 3.554 r_scbond_it 2.111 r_angle_refined_deg 1.711 r_mcangle_it 1.229 r_mcbond_it 0.604 r_chiral_restr 0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.852 r_dihedral_angle_4_deg 21.286 r_dihedral_angle_3_deg 18.929 r_dihedral_angle_1_deg 6.609 r_scangle_it 3.554 r_scbond_it 2.111 r_angle_refined_deg 1.711 r_mcangle_it 1.229 r_mcbond_it 0.604 r_chiral_restr 0.117 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16124 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 292
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing