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Structure of the mixed-function P450 MycG F286A mutant in complex with mycinamicin IV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y4H PDB ENTRY 2Y4H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 2.5% PEG 1500; 0.1 M SODIUM MALONATE, PH 5.0; 2% BENZAMIDINE.
Crystal Properties Matthews coefficient Solvent content 2.4 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.214 α = 90 b = 100.94 β = 90 c = 440.842 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH MIRRORS 2011-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 146.95 89.2 0.08 10.9 5.4 91500 1.5 24.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 64.2 0.56 1.7 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2Y4H 1.9 220.42 86665 4576 88.61 0.18818 0.18522 0.1834 0.24497 0.2424 RANDOM 24.422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.28 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.392 r_dihedral_angle_4_deg 18.737 r_dihedral_angle_3_deg 15.061 r_dihedral_angle_1_deg 5.745 r_scangle_it 4.824 r_scbond_it 3.085 r_angle_refined_deg 1.902 r_mcangle_it 1.895 r_mcbond_it 1.11 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.392 r_dihedral_angle_4_deg 18.737 r_dihedral_angle_3_deg 15.061 r_dihedral_angle_1_deg 5.745 r_scangle_it 4.824 r_scbond_it 3.085 r_angle_refined_deg 1.902 r_mcangle_it 1.895 r_mcbond_it 1.11 r_chiral_restr 0.126 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9234 Nucleic Acid Atoms Solvent Atoms 1021 Heterogen Atoms 354
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing