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pVHL54-213-EloB-EloC complex (4R)-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL)BENZYL]-L-PROLINAMIDE bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RZF PDB ENTRY 3RZF (APO STRUCTURE V54BC)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1.M NA CITRATE PH 5.6, 0.2 M MG ACETATE, 15% PEG 8000, 50.MM DTT.
Crystal Properties Matthews coefficient Solvent content 2.76 55.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.741 α = 90 b = 93.741 β = 90 c = 363.184 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 45.39 93.9 0.12 9.6 4.8 34397 3 56
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 91.9 0.51 2.5 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3RZF (APO STRUCTURE V54BC) 2.9 41.92 32437 1742 91.83 0.24772 0.24224 0.2394 0.35042 0.3441 RANDOM 37.644
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.14 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.065 r_dihedral_angle_3_deg 21.987 r_dihedral_angle_4_deg 20.115 r_dihedral_angle_1_deg 8.539 r_scangle_it 2.975 r_angle_refined_deg 1.921 r_scbond_it 1.745 r_mcangle_it 1.26 r_mcbond_it 0.661 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.065 r_dihedral_angle_3_deg 21.987 r_dihedral_angle_4_deg 20.115 r_dihedral_angle_1_deg 8.539 r_scangle_it 2.975 r_angle_refined_deg 1.921 r_scbond_it 1.745 r_mcangle_it 1.26 r_mcbond_it 0.661 r_chiral_restr 0.12 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10210 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 120
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing