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Structural basis for agonism and antagonism for a set of chemically related progesterone receptor modulators
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 20-30%POLYETHYLENE GLYCOL 3350, 0.1M HEPES PH 6.5, 100 MM MG2SO4, 10% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.252 α = 90 b = 64.057 β = 96.62 c = 69.691 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 46.18 96.5 0.07 12.9 3.7 44010
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.8 69.171 41751 96.1429 0.1843 0.2053 0.2207 0.2421 RANDOM 28.736
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.95 0.93 -0.71 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.255 r_dihedral_angle_4_deg 16.365 r_dihedral_angle_3_deg 14.023 r_dihedral_angle_1_deg 5.359 r_scangle_it 3.403 r_scbond_it 2.226 r_mcangle_it 1.307 r_angle_refined_deg 1.17 r_angle_other_deg 0.807 r_mcbond_it 0.716
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.255 r_dihedral_angle_4_deg 16.365 r_dihedral_angle_3_deg 14.023 r_dihedral_angle_1_deg 5.359 r_scangle_it 3.403 r_scbond_it 2.226 r_mcangle_it 1.307 r_angle_refined_deg 1.17 r_angle_other_deg 0.807 r_mcbond_it 0.716 r_mcbond_other 0.211 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4041 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling