☰ Navigation Tabs
Structure of the Streptococcus pneumoniae surface protein and adhesin PfbA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 12% (W/V) 10K POLYETHYLENE GLYCOL, 80 MM MG DIFORMATE (C2H2MGO4) AND BIS-TRIS-HCL (PH 5.5)
Crystal Properties Matthews coefficient Solvent content 2.94 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.84 α = 90 b = 140.65 β = 90 c = 128.64 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD VERTICAL COLLIMATING MIRROR 2012-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 38 100 0.13 6.7 5.5 26446
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.4 100 0.5 2.4 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.28 57.44 25097 1340 99.97 0.21045 0.20804 0.2089 0.2551 0.2565 RANDOM 42.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.26 1.04 -6.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.603 r_dihedral_angle_3_deg 18.505 r_dihedral_angle_4_deg 13.727 r_dihedral_angle_1_deg 8.79 r_angle_refined_deg 1.666 r_chiral_restr 0.119 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.603 r_dihedral_angle_3_deg 18.505 r_dihedral_angle_4_deg 13.727 r_dihedral_angle_1_deg 8.79 r_angle_refined_deg 1.666 r_chiral_restr 0.119 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3236 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing