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Acinetobacter baumannii RibD, form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZPC PDB ENTRY 3ZPC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M AMMONIUM SULFATE, 0.125 M SODIUM CACODYLATE, 30% W/V POLYETHYLENE GLYCOL 8000
Crystal Properties Matthews coefficient Solvent content 3.19 61.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.998 α = 90 b = 72.998 β = 90 c = 201.456 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS 2011-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 51.62 99.5 0.06 24.7 13.3 38040
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.1 97 0.62 4.1 12
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZPC 1.99 68.63 36017 1897 99.4 0.21508 0.21393 0.2119 0.23671 0.231 RANDOM 44.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.52 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.652 r_dihedral_angle_4_deg 20.453 r_dihedral_angle_3_deg 14.411 r_dihedral_angle_1_deg 5.631 r_scangle_it 2.808 r_scbond_it 1.77 r_angle_refined_deg 1.288 r_mcangle_it 1.109 r_mcbond_it 0.597 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.652 r_dihedral_angle_4_deg 20.453 r_dihedral_angle_3_deg 14.411 r_dihedral_angle_1_deg 5.631 r_scangle_it 2.808 r_scbond_it 1.77 r_angle_refined_deg 1.288 r_mcangle_it 1.109 r_mcbond_it 0.597 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2714 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing