☰ Navigation Tabs
Crystal structure of BCL-XL in complex with inhibitor (Compound 6)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZK6 PDB ENTRY 3ZK6 CHAIN A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 2 M (NH4)2SO4, 0.5 M GUANADINE HCL, 0.1 M MES PH 6.0
Crystal Properties Matthews coefficient Solvent content 2.15 47.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.832 α = 90 b = 67.832 β = 90 c = 67.383 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS-IV MEECO CAPILLARY 2007-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.9 0.09 4.4 5766 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 99.1 0.55 3.5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3ZK6 CHAIN A 2.601 33.916 1.38 5766 265 99.88 0.1972 0.1932 0.1973 0.2822 0.2882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.438 f_angle_d 1.188 f_chiral_restr 0.069 f_bond_d 0.009 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1142 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 39
Software Software Software Name Purpose PHENIX refinement DENZO data reduction SCALEPACK data scaling PHASER phasing