☰ Navigation Tabs
Crystal structure of the sodium binding rotor ring at pH 5.3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WGM PDB ENTRY 2WGM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.3 pH 5.3
Crystal Properties Matthews coefficient Solvent content 4.06 0.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.77 α = 90 b = 83.9 β = 112.85 c = 150.99 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 99.5 0.21 8.65 4.5 158380 1.35 33.87
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 99.4 1.15 1.35 4.31
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2WGM 2.2 29.747 1.99 158186 7909 99.56 0.209 0.2076 0.212 0.2337 0.2382
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.925 f_angle_d 2.097 f_chiral_restr 0.091 f_bond_d 0.016 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13640 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 875
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing