3ZJG

A20 OTU domain with irreversibly oxidised Cys103 from 60 min H2O2 soak.


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2VFJPDB ENTRY 2VFJ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.22-2.5 M NACL, 0.1 M MES [PH 6-6.7] CRYSTALS WERE SOAKED IN 50 UM H2O2 FOR 60 MIN PRIOR TO FREEZING AND DATA COLLECTION.
Crystal Properties
Matthews coefficientSolvent content
2.8556

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.8α = 98.57
b = 69.17β = 100.51
c = 85γ = 97.1
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-01-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I02DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9236.3295.30.0613.13.269737231.16
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.922.0294.60.571.93.1

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 2VFJ1.92341.9669710352795.270.18610.18430.2203
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d15.016
f_angle_d1.679
f_chiral_restr0.128
f_bond_d0.018
f_plane_restr0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5181
Nucleic Acid Atoms
Solvent Atoms259
Heterogen Atoms3

Software

Software
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing