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Crystal structure of GMPPNP-bound human GIMAP7 L100Q variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XTN PDB ENTRY 2XTN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 19% PEG 3350, 100 MM MOPS PH 6.5.
Crystal Properties Matthews coefficient Solvent content 2.24 45.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.853 α = 77.3 b = 90.939 β = 85.23 c = 114.551 γ = 89.23
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.09 35 95.3 0.11 7.24 1.8 31271 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.09 3.28 93.2 0.49 1.58 1.83
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2XTN 3.15 32.438 1.99 29758 1481 95.68 0.2379 0.2343 0.2401 0.3052 0.2377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.501 f_angle_d 0.921 f_chiral_restr 0.053 f_bond_d 0.004 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12423 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 198
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling MOLREP phasing