☰ Navigation Tabs
X-ray structure of E.coli Wrba in complex with FMN at 1.2 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R97 PDB ENTRY 2R97
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 WRBA-FAD AT A CONCENTRATION OF 5 MG/ML IN 20 MM TRIS PH 6.5 CRYSTALLYZED AGAINST WELL CONTAINING 28% PEG 3350 AND 0.05 M BIS-TRIS-HCL, PH 6.5.
Crystal Properties Matthews coefficient Solvent content 1.85 34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.15 α = 90 b = 61.15 β = 90 c = 169.59 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 22.7 96.6 0.06 14.3 7.6 97715 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 75.1 0.68 2.2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2R97 1.2 21.46 92773 4864 96.37 0.14846 0.1473 0.1546 0.1704 0.1792 RANDOM 15.468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.2 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.632 r_sphericity_free 30.721 r_sphericity_bonded 11.155 r_dihedral_angle_3_deg 11.132 r_dihedral_angle_4_deg 10.667 r_dihedral_angle_1_deg 5.326 r_rigid_bond_restr 2.725 r_angle_refined_deg 1.373 r_angle_other_deg 0.836 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.632 r_sphericity_free 30.721 r_sphericity_bonded 11.155 r_dihedral_angle_3_deg 11.132 r_dihedral_angle_4_deg 10.667 r_dihedral_angle_1_deg 5.326 r_rigid_bond_restr 2.725 r_angle_refined_deg 1.373 r_angle_other_deg 0.836 r_chiral_restr 0.11 r_gen_planes_refined 0.014 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2725 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing