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Re-refined structure of the human Sirt2 apoform
Crystallization Crystal Properties Matthews coefficient Solvent content 2.33 47.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.94 α = 90 b = 119.07 β = 90 c = 218.22 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV M SINGLE WAVELENGTH 2 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.54 2 SYNCHROTRON CHESS BEAMLINE F1 0.98 CHESS F1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.63 19.84 120106 2441 95.84 0.16839 0.16785 0.1774 0.19503 0.2032 RANDOM 22.055
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 0.13 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.235 r_sphericity_bonded 26.578 r_dihedral_angle_4_deg 20.036 r_dihedral_angle_3_deg 14.849 r_dihedral_angle_1_deg 6.815 r_scbond_it 2.531 r_mcangle_it 2.323 r_angle_refined_deg 1.793 r_mcbond_it 1.525 r_mcbond_other 1.522
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.235 r_sphericity_bonded 26.578 r_dihedral_angle_4_deg 20.036 r_dihedral_angle_3_deg 14.849 r_dihedral_angle_1_deg 6.815 r_scbond_it 2.531 r_mcangle_it 2.323 r_angle_refined_deg 1.793 r_mcbond_it 1.525 r_mcbond_other 1.522 r_angle_other_deg 0.819 r_chiral_restr 0.12 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7451 Nucleic Acid Atoms Solvent Atoms 1082 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement