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Geobacillus thermodenitrificans EsxA crystal form I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other GTHESXA CRYSTAL FORM II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 RESERVOIR 0.1 M NH4AC PH4.5, 1 M (NH4)2PO4
Crystal Properties Matthews coefficient Solvent content 2.25 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.948 α = 90 b = 58.641 β = 112.36 c = 85.219 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 DECTRIS TWO-DIMENSIONAL HYBRID PIXEL ARRAY KIRKPATRICK BAEZ BIMORPH MIRROR PAIR 2012-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 35 98 0.07 17.9 5.7 56211 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.04 96.9 0.2 4.2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT GTHESXA CRYSTAL FORM II 1.94 34.28 53299 2848 97.31 0.21131 0.20873 0.2074 0.25901 0.259 RANDOM 38.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.976 r_dihedral_angle_4_deg 17.174 r_dihedral_angle_3_deg 15.958 r_dihedral_angle_1_deg 4.824 r_angle_refined_deg 1.266 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.976 r_dihedral_angle_4_deg 17.174 r_dihedral_angle_3_deg 15.958 r_dihedral_angle_1_deg 4.824 r_angle_refined_deg 1.266 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5817 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing