☰ Navigation Tabs
Crystal structure of metallo-beta-lactamase H8A from Thermotoga maritima
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.2 295 51% (w/v) 2-Methyl-2,4-pentanediol(MPD), pH 9.2, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 5.24 76.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.883 α = 90 b = 143.883 β = 90 c = 149.844 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.00001 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 50 100 45336 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.72 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.67 47.19 42048 42048 1987 97.34 0.18324 0.18324 0.18211 0.1841 0.20707 0.2086 RANDOM 49.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.968 r_dihedral_angle_3_deg 12.334 r_dihedral_angle_4_deg 11.856 r_long_range_B_refined 9.442 r_long_range_B_other 9.439 r_dihedral_angle_1_deg 5.688 r_mcangle_it 3.645 r_mcangle_other 3.645 r_scangle_other 3.271 r_mcbond_it 2.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.968 r_dihedral_angle_3_deg 12.334 r_dihedral_angle_4_deg 11.856 r_long_range_B_refined 9.442 r_long_range_B_other 9.439 r_dihedral_angle_1_deg 5.688 r_mcangle_it 3.645 r_mcangle_other 3.645 r_scangle_other 3.271 r_mcbond_it 2.034 r_mcbond_other 2.034 r_scbond_it 1.825 r_scbond_other 1.825 r_angle_refined_deg 0.909 r_angle_other_deg 0.658 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5190 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 3
Software Software Software Name Purpose HKL-2000 data collection CCP4 model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing