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Crystal structure of RuCO/apo-WTFr
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1M ammonium sulfate, 20 mM cadmium sulfate, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.15 60.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.863 α = 90 b = 181.863 β = 90 c = 181.863 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII 2014-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 44.51 20.5 17978 16.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DAT 2 21.43 17054 919 99.82 0.16004 0.15794 0.171 0.19917 0.2057 RANDOM 20.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.653 r_dihedral_angle_4_deg 20.847 r_dihedral_angle_3_deg 14.474 r_long_range_B_refined 7.096 r_long_range_B_other 7.026 r_dihedral_angle_1_deg 5.516 r_scangle_other 5.128 r_scbond_it 3.405 r_scbond_other 3.37 r_mcangle_it 3.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.653 r_dihedral_angle_4_deg 20.847 r_dihedral_angle_3_deg 14.474 r_long_range_B_refined 7.096 r_long_range_B_other 7.026 r_dihedral_angle_1_deg 5.516 r_scangle_other 5.128 r_scbond_it 3.405 r_scbond_other 3.37 r_mcangle_it 3.23 r_mcangle_other 3.229 r_mcbond_it 2.085 r_mcbond_other 2.037 r_angle_refined_deg 1.98 r_angle_other_deg 0.991 r_chiral_restr 0.13 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1389 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 47
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement HKL-2000 data scaling