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Crystal structure of Nit6803
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Structure determined by MAD and refinement using the native data.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 Sodium Cacodylate, PEG4K, MPD, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.91 68.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.545 α = 90 b = 113.545 β = 90 c = 161.009 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-02-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 99.8 20270 20231 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.18 99.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT Structure determined by MAD and refinement using the native data. 3.1 49.21 2 20270 20231 1096 99.75 0.166 0.16565 0.16419 0.1679 0.19237 0.196 RANDOM 63.374
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.82 0.82 -2.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.877 r_dihedral_angle_4_deg 21.409 r_dihedral_angle_3_deg 18.549 r_dihedral_angle_1_deg 10.63 r_angle_refined_deg 1.991 r_angle_other_deg 1.062 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.877 r_dihedral_angle_4_deg 21.409 r_dihedral_angle_3_deg 18.549 r_dihedral_angle_1_deg 10.63 r_angle_refined_deg 1.991 r_angle_other_deg 1.062 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4429 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling