☰ Navigation Tabs
D-threo-3-hydroxyaspartate dehydratase from Delftia sp. HT23
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 13% PEG3350, 0.2M MgCl2, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.97 58.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.689 α = 90 b = 157.689 β = 90 c = 158.784 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 0.98000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 100 0.089 33.66 14.7 157557 157557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 100 0.765 4.99 14.6 7806
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 45.63 149594 7908 99.88 0.1227 0.1211 0.1189 0.1518 0.15 RANDOM 21.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.09 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.301 r_sphericity_free 29.759 r_dihedral_angle_4_deg 19.295 r_sphericity_bonded 19.213 r_dihedral_angle_3_deg 12.927 r_rigid_bond_restr 8.954 r_dihedral_angle_1_deg 5.912 r_angle_refined_deg 2.177 r_chiral_restr 0.17 r_bond_refined_d 0.026
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.301 r_sphericity_free 29.759 r_dihedral_angle_4_deg 19.295 r_sphericity_bonded 19.213 r_dihedral_angle_3_deg 12.927 r_rigid_bond_restr 8.954 r_dihedral_angle_1_deg 5.912 r_angle_refined_deg 2.177 r_chiral_restr 0.17 r_bond_refined_d 0.026 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5731 Nucleic Acid Atoms Solvent Atoms 650 Heterogen Atoms 55
Software Software Software Name Purpose ADSC data collection SHELXCD phasing SHELXE model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling